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wells-wood-research
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timed-design
Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
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protein display is broken
#46
universvm
closed
1 year ago
0
Add isambard to requirement
#45
universvm
closed
1 year ago
0
Bump setuptools from 62.1.0 to 65.5.1
#44
dependabot[bot]
closed
1 year ago
0
Bump tensorflow from 2.7.2 to 2.9.3
#43
dependabot[bot]
closed
1 year ago
0
Integrate ESMFold and/or Omegafold
#42
universvm
closed
1 year ago
1
When PDB code of protein runs it is replaced with 1QYS
#41
universvm
closed
1 year ago
0
Monte Carlo is broken
#40
universvm
closed
1 year ago
0
Fix/sequence logo
#39
universvm
closed
2 years ago
0
Fix sequence logo
#38
universvm
closed
2 years ago
1
Data management
#37
universvm
closed
2 years ago
0
polar and charge fail with multichain input
#36
universvm
closed
1 year ago
0
Bump tensorflow from 2.7.0 to 2.7.2
#35
dependabot[bot]
closed
2 years ago
0
#32 #7 Add sequence logo + tests
#34
universvm
closed
2 years ago
0
Calculate KL divergence between probabilities
#33
universvm
closed
2 years ago
0
Add sequence logo based on the probability distribution
#32
universvm
closed
2 years ago
0
Feat/hydropolar
#31
universvm
closed
2 years ago
0
Bump streamlit from 1.9.0 to 1.11.1
#30
dependabot[bot]
closed
2 years ago
0
How to cite the project?
#29
napoles-uach
closed
2 years ago
3
Include polar and hydrophobic models
#28
universvm
closed
2 years ago
0
Add package installation option
#27
universvm
closed
2 years ago
0
Add uploading option
#26
universvm
closed
2 years ago
2
Create a python package
#25
universvm
closed
2 years ago
0
Add session option
#24
universvm
closed
1 year ago
0
have different pages
#23
universvm
closed
1 year ago
1
"rot" is appended to any predictions even with --predict_rotamers = False
#22
universvm
closed
2 years ago
0
Add pdb upload option
#21
universvm
closed
2 years ago
0
Fix mc not being run
#20
universvm
closed
2 years ago
0
Fix monte carlo not running all the time
#19
universvm
closed
2 years ago
0
Add documentation + sample code for UI
#18
universvm
closed
2 years ago
0
Bump tensorflow from 2.7.0 to 2.7.2
#17
dependabot[bot]
closed
2 years ago
1
Feat/UI-5
#16
universvm
closed
2 years ago
0
Connect UI with monte carlo for basic optimisation
#15
universvm
closed
2 years ago
0
Order UI Sections with functions
#14
universvm
closed
2 years ago
0
Double check TIMED default model
#13
universvm
closed
2 years ago
0
Disable run button after being pressed
#12
universvm
closed
2 years ago
1
Analysis
#11
universvm
closed
2 years ago
0
Fix predict + add partitioning script
#10
universvm
closed
2 years ago
0
Add rotamer analysis + scripts
#9
universvm
closed
2 years ago
0
Add sequence metrics + refactor
#8
universvm
closed
2 years ago
0
Timed-rotamer model .csv returns a binary prediction rather than a distribution
#7
universvm
closed
2 years ago
3
possible bug with rotamer categories
#6
universvm
closed
2 years ago
0
Create Colab/Gradio Interface
#5
universvm
closed
2 years ago
0
Bump tensorflow from 2.7.0 to 2.8.0
#4
dependabot[bot]
closed
2 years ago
0
Feat/rotamers
#3
universvm
closed
2 years ago
0
Find all models in folder and predict with those
#2
universvm
closed
2 years ago
0
Add sequence analysis plot
#1
universvm
closed
2 years ago
0
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