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wenbostar / PDV

PDV: an integrative proteomics data viewer
GNU General Public License v3.0
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Command line problem #3

Closed wenbostar closed 5 years ago

wenbostar commented 6 years ago

System: Linux java -jar PDV-1.0.0.jar --help Exception in thread "main" java.awt.HeadlessException: No X11 DISPLAY variable was set, but this program performed an operation which requires it. at java.awt.GraphicsEnvironment.checkHeadless(GraphicsEnvironment.java:204) at java.awt.Window.(Window.java:536) at java.awt.Frame.(Frame.java:420) at java.awt.Frame.(Frame.java:385) at javax.swing.JFrame.(JFrame.java:189) at PDVCLI.PDVCLIMainClass.(PDVCLIMainClass.java:173) at PDVGUI.gui.PDVMainClass.main(PDVMainClass.java:247)

wenbostar commented 6 years ago

In Linux system, PDV requires X11 environment to automatically generate figures.

Kirovez commented 6 years ago

Is it possible to run ONE PSM mode under command line? I need to generate graph using single spectrum .mgf file and .txt file with single peptide.

wenbostar commented 6 years ago

Yes, it's possible. You can take a look at the section "4 Using PDV in command line mode" in the PDV user manual: PDV user's manual. But I recommend you to use the GUI if you only want to visualize one PSM.