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wenbostar / PDV

PDV: an integrative proteomics data viewer
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Exception in thread "DisplayThread" java.lang.NullPointerException #60

Open Yck711 opened 1 year ago

Yck711 commented 1 year ago

Hi,

I have encountered an issue when i check the spectrum of file generated from MaxQuant. The log is following:

Wed Aug 23 11:39:23 CST 2023: PDV-1.8.1 The local country is CN SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/D:/Tools/Others/PDV-1.8.1/PDV-1.8.1/lib/slf4j-log4j12-1.6.1.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/D:/Tools/Others/PDV-1.8.1/PDV-1.8.1/lib/logback-classic-1.1.6.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory] Exception in thread "DisplayThread" java.lang.NullPointerException at java.io.FileInputStream.(Unknown Source) at java.io.FileReader.(Unknown Source) at PDVGUI.fileimport.MaxQuantFileImport.getAllSpectrumRT(MaxQuantFileImport.java:292) at PDVGUI.gui.PDVMainClass$21.run(PDVMainClass.java:2143)

And there is no issues was reported when i use the test data on the github Thank you

wenbostar commented 1 year ago

It's likely due to MaxQuant version issue. Which version of MaxQuant are you using?

Yck711 commented 1 year ago

It's likely due to MaxQuant version issue. Which version of MaxQuant are you using? The version of MaxQuant is v2.0.1.0

wenbostar commented 11 months ago

@KaiLiCn, Any idea how to fix it?

KaiLiCn commented 11 months ago

Sorry, I still need some time to test the new MaxQuant results.