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wenbostar / PDV

PDV: an integrative proteomics data viewer
GNU General Public License v3.0
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FragPipe/DIA-Umpire #63

Closed wenbostar closed 9 months ago

wenbostar commented 9 months ago

When I loaded the psm.tsv and mzML files generated from FragPipe/DIA-Umpire into PDV, I got the following error:

java.lang.NullPointerException
    at PDVGUI.fileimport.FragePipeImport.getSpectrum(FragePipeImport.java:766)
    at PDVGUI.fileimport.FragePipeImport.parseResultMzML(FragePipeImport.java:316)
    at PDVGUI.fileimport.FragePipeImport.access$000(FragePipeImport.java:42)
    at PDVGUI.fileimport.FragePipeImport$1.run(FragePipeImport.java:159)
KaiLiCn commented 9 months ago

Hi Bo,

Did you try to open the result directly inside the FragPipe? Can you share your psm.tsv and mzML file with me?

Kai

wenbostar commented 9 months ago

This is fixed in v1.8.2.