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weng-lab / ENCODE-cCREs

Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
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A question about ChromInfo.txt in FigS2ch #4

Open zhangpicb opened 2 years ago

zhangpicb commented 2 years ago

Hi @Jill-Moore ,

Supplementary-Figure-2ch.Genomic-Coverage.sh calculates hg38cCRE/hg38 total base pairs,chromInfo.txt with chrALT sequence can produce the paper's data 7.9%.Maybe using chrominfo.txt without chrALT could be more accurate,or some cCRE in chrALT,so use chromInfo.txt with chrALT.

Thanks in advanced!