pipeline for analysis of ATAC-seq and chip-seq??

weng-lab / ENCODE-cCREs

Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements

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pipeline for analysis of ATAC-seq and chip-seq?? #7

Open songxh1996 opened 1 year ago

songxh1996 commented 1 year ago

Thank you for a very good resource. My data analysis is chip-seq and ATAC-seq, not DNase-seq. Does your workflow apply to my data? Is there any process you apply specifically to ATAC-seq that I haven't found.