search

weng-lab / SCREEN

MIT License
8 stars 2 forks source link

New feature: add Bru-seq, BruUV-seq, and BruChase-seq quantifications #165

Open Jill-Moore opened 1 year ago

Jill-Moore commented 1 year ago

Start with 16 well characterized cell line datasets + WTC11 (ignoring HCT116 degron data for now)

16 cell lines + WTC11 https://www.encodeproject.org/search/?type=Experiment&control_type%21=%2A&status=released&perturbed=false&assay_title=Bru-seq

16 cell lines https://www.encodeproject.org/search/?type=Experiment&control_type%21=%2A&status=released&perturbed=false&assay_title=BruUV-seq

32 experiments (16 cell lines w/ 2 time points each) https://www.encodeproject.org/search/?type=Experiment&control_type!=*&status=released&perturbed=false&assay_title=BruChase-seq