weng-lab / SCREEN

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Unable to find some HG38 ENCODE cCREs from UCSC table browser in SCREEN v3 #220

Open hchetia opened 7 months ago

hchetia commented 7 months ago

Hi, I am using the annotation of ENCODE cCREs provided in UCSC table browser for HG38.

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However, some of these elements are not present in SCREEN registry3.

EXAMPLE 1- here's an example element that I couldn't find in SCREEN using either the ID or the genomic coordinates.

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I was also not able to access registry2 that the search page tried to redirect me to. I got "bad gateway" message for this link.

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EXAMPLE 2- here's an example element that I couldn't find in SCREEN using the ID.

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For the second example, search using the genomic coordinates led to an enhancer with a different ID but overlaps the one I originally searched for.

What I can do to the corresponding information accurately for these missing IDs from SCREEN?

Thanks.