search

wenweixiong / MARVEL

40 stars 9 forks source link

No transcripts identified #11

Open cghmyway opened 1 year ago

cghmyway commented 1 year ago

Thank you for providing an interesting tool for analyzing alternative splicing. When conducting SJ position analysis, no transcripts were identified, even different genes. Here is our code and results.

marvel <- adhocGene.PlotSJPosition.10x(MarvelObject=marvel,
+                                           coord.intron=coord.intron,
+                                           rescale_introns=FALSE,
+                                           show.protein.coding.only=TRUE,
+                                           anno.label.size=1.5)
Retrieving transcripts from GTF file...
0 transcripts identified
Error in DataFrame(..., check.names = FALSE) : 
  different row counts implied by arguments

how to solve this problem?

wenweixiong commented 1 year ago

May you share your R object and complete script so that I may look into this please?