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wenweixiong / MARVEL

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Error in adhocGene.PlotSJPosition.10x function. #23

Closed JFerrer-B closed 9 months ago

JFerrer-B commented 9 months ago

I have a problem running the function adhocGene.PlotSJPosition.10x. I share the error message.

marvel <- adhocGene.PlotSJPosition.10x(MarvelObject=marvel, coord.intron=coord.intron, rescale_introns=TRUE, show.protein.coding.only=TRUE, anno.label.size=1.5)

Retrieving transcripts from GTF file... 9 transcripts identified Error in wiggleplotr::plotTranscripts(exons = grange.exon.list, cdss = grange.cds.list, : unused arguments (anno.colors = anno.colors, anno.label.size = anno.label.size)

I hope you can help me with this. This function provides very useful pictures. Thanks in advance for your help. Juan

wenweixiong commented 9 months ago

Hi Juan,

Please download the modified wiggleplotr package from here: http://datashare.molbiol.ox.ac.uk/public/project/meadlab/wwen/wiggleplotr_1.18.0.tar.gz

And then install the package with: install.packages("wiggleplotr_1.18.0.tar.gz", repos=NULL, type="source")

This wiggleplotr package has been modified from the original CRAN version and should contain the arguments anno.colors and anno.label.size

Sean

JFerrer-B commented 9 months ago

I worked! Thanks