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wenweixiong / MARVEL

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Aggregate figures issue #24

Closed JFerrer-B closed 9 months ago

JFerrer-B commented 9 months ago

The adhocGene.PlotSJPosition.10x function only accepts a coord.intron as input. However, in the tutorial (https://wenweixiong.github.io/MARVEL_Droplet.html#Candidate_gene_analysis) you can see in the last figure that there is an image of the transcriptome with several junctions at the same time. Is there a function for this picture?

image

wenweixiong commented 9 months ago

Indeed the adhocGene.PlotSJPosition.10x function only plot one splice junction at a time. After generating the individual splice junction plots, we would have to merge them and perform other edits, e.g., customise the colours, manually in PowerPoint, Adobe etc..