search

wenweixiong / MARVEL

42 stars 9 forks source link

does the 10 #31

Closed CCCBBG closed 11 months ago

CCCBBG commented 11 months ago

Can Nonsense-mediated decay (NMD) prediction analysis be performed with 10x Genomics data？

wenweixiong commented 11 months ago

NMD prediction is only applicable for exon-level splicing analysis, i.e., plate-based. Unfortunately, MARVEL doesn't predict NMD for splice junction-level splicing analysis, i.e., 10x Genomics..

CCCBBG commented 11 months ago

thanks a lot