Is the tool available for snRNA data

wenweixiong / MARVEL

38 stars 9 forks source link

Is the tool available for snRNA data #9

Closed longfeili5170 closed 1 year ago

longfeili5170 commented 1 year ago

Hi！

I am very interested in the tool, but the data I have is 10X multiome. So I would like to know if I can use this tool to process snRNA data? Looking forward to your reply.

Thanks!!!

wenweixiong commented 1 year ago

MARVEL is built for single-cell splicing analysis. For 10x multiome, I would recommend Signac (https://stuartlab.org/signac/articles/pbmc_multiomic.html). After which, if you're interested in splicing analysis, you may retrieve and format the relevant data from Signac and feed them into MARVEL. Input files format for MARVEL here: See "Input files" section of the tutorial https://wenweixiong.github.io/MARVEL_Droplet.html