Foldseek can't be used

[huanggewudi]

I download foldseek from here https://drive.google.com/file/d/1B_9t3n_nlj8Y3Kpc_mMjtMdY0OPYa7Re/view and put into /home/ubuntu/bin/ but maybe it can't be used

thanks for your answer.

[LTEnjoy]

Hi, thank you for your interest in our work!

I'm sorry but I doubt that this error was not caused by foldseek. Maybe you could try the command cd /home/ubuntu/bin and use ls to check the existence of the foldseek file. If it does exist, then use ./foldseek to test whether it works well.

Hope this could resolve your problem :)

[huanggewudi]

I try this, and worked.Thank you!

Linux AVX2 build (check using: cat /proc/cpuinfo | grep avx2)

wget https://mmseqs.com/foldseek/foldseek-linux-avx2.tar.gz; tar xvzf foldseek-linux-avx2.tar.gz; export PATH=$(pwd)/foldseek/bin/:$PATH

[douzhuang]

I am unable to use Foldseek in a Windows environment, is this due to a version issue?

[LTEnjoy]

Hi, we have updated the get_struc_seq function which enables users to output foldseek outputs. You can update this file and set foldseek_verbose to True to check what the problem was.