I would like to combine the results of several search engines and perform a re-scoring with mokapot to import the results into the Trans Proteomic Pipeline (TPP). I want to create a spectral library from the results but I would need the mokapot output as a pepXML file. Would it be possible to add this export option in mokapot, please?.
I would like to combine the results of several search engines and perform a re-scoring with mokapot to import the results into the Trans Proteomic Pipeline (TPP). I want to create a spectral library from the results but I would need the mokapot output as a pepXML file. Would it be possible to add this export option in mokapot, please?.
Thank you very much.
Best regards, Sergio