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wfondrie / mokapot

Fast and flexible semi-supervised learning for peptide detection in Python
https://mokapot.readthedocs.io
Apache License 2.0
41 stars 15 forks source link

Updates for PepXML support #12

Closed wfondrie closed 3 years ago

wfondrie commented 3 years ago

The modification appended to the peptide sequence for open modification searches was incorrect, because the bin index was off by one. This PR fixes it and adds a test.

codecov-io commented 3 years ago

Codecov Report

Merging #12 (eb987f3) into master (4b31cbc) will not change coverage. The diff coverage is 66.66%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master      #12   +/-   ##
=======================================
  Coverage   76.61%   76.61%           
=======================================
  Files          15       15           
  Lines        1364     1364           
=======================================
  Hits         1045     1045           
  Misses        319      319
Impacted Files Coverage Δ
mokapot/parsers/pepxml.py 86.88% <66.66%> (ø)

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