Open wfondrie opened 1 year ago
Merging #96 (d9bfc33) into main (ca5a8df) will decrease coverage by
5.45%
. The diff coverage is88.95%
.:exclamation: Current head d9bfc33 differs from pull request most recent head 96de300. Consider uploading reports for the commit 96de300 to get more accurate results
@@ Coverage Diff @@
## main #96 +/- ##
==========================================
- Coverage 85.36% 79.92% -5.45%
==========================================
Files 19 21 +2
Lines 1640 1315 -325
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- Hits 1400 1051 -349
- Misses 240 264 +24
Files | Coverage Δ | |
---|---|---|
mokapot/__init__.py | 100.00% <100.00%> (+40.00%) |
:arrow_up: |
mokapot/base.py | 100.00% <100.00%> (ø) |
|
mokapot/mixins.py | 100.00% <100.00%> (ø) |
|
mokapot/parsers/__init__.py | 100.00% <100.00%> (ø) |
|
mokapot/qvalues.py | 68.62% <100.00%> (+24.47%) |
:arrow_up: |
mokapot/version.py | 100.00% <100.00%> (ø) |
|
mokapot/writers/__init__.py | 100.00% <100.00%> (ø) |
|
mokapot/schema.py | 98.66% <98.66%> (ø) |
|
mokapot/writers/flashlfq.py | 96.66% <95.23%> (-3.34%) |
:arrow_down: |
mokapot/writers/tabular.py | 97.29% <97.29%> (ø) |
|
... and 11 more |
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This is a huge, in-progress PR swapping out the Pandas backend for Polars. The goal is to improve the speed and scalability of mokapot.
In addition to this huge change, this PR also:
LinearPsmDataset
in favor of justPsmDataset
, with an upcomingPeptideDataset
for DIA data. Similar API changes will also be made with the Confidence classes.Notably, this PR may also merge in work done by @sambenfredj.