wheaton5 / souporcell

Clustering scRNAseq by genotypes
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shared_samples.py interpretation #196

Open jordanchervin opened 1 year ago

jordanchervin commented 1 year ago

Hello! Can you please help me to interpret this output? We had 2 experiments of 9 pooled subjects. Based on guidance in other threads I would expect to utilize the results from the first 9 lines; however, the assignments are not exactly 1:1 and the loss dropoff isn't as significant as others' results. Thanks in advance.

cell clusters 1442 cell clusters 7551 clusters for experiment1 9 clusters for experiment2 9 experiment1_cluster experiment2_cluster loss 6 2 0.0471381967416128 3 5 0.047915945815628656 7 0 0.16276478683540277 4 7 0.3103469953244947 2 1 0.33617598536534016 5 6 0.3422813551410104 0 4 0.8839316232589719 1 3 1.393985716965079 8 0 5.235729438631943 6 8 5.754582233411029 2 3 7.051729856312175 1 1 7.4238915714744955 1 2 9.971574914810809 1 8 10.210221722952832 5 2 10.389207752364138 4 3 10.40058586593224 4 1 10.753741967654722 8 4 10.83206258185111