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wheaton5 / souporcell

Clustering scRNAseq by genotypes
MIT License
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sparse mixture model clustering result #210

Open Huimin721 opened 11 months ago

Huimin721 commented 11 months ago

Dear authors,

Thank you for developing the outstanding method. I'm trying to plot the sparse mixture model clustering result with the output of our own data. If I want to reproduce a figure like Fig1d in your paper, could I ask where the dimensional reduction data is in the outputs? Thanks so much!

wheaton5 commented 11 months ago

It is not in the output and this is widely requested. I need to reproduce someone's results who is having a problem with this so when I do that I can make a script for generating this. I can do that this week and get back to you.

Huimin721 commented 11 months ago

Great! Thanks so much!

johnyaku commented 11 months ago

This would be extremely helpful for us too!! Watching this space 👀

Huimin721 commented 10 months ago

@wheaton5 Hello, may I follow up on this request please? Still eager for the code!

ktpolanski commented 10 months ago

Tossing a comment here as I'm interested as well. I tried to make something along those lines happen based on the vartrix ref/alt today, to little success.