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wheretrue / biobear

Work with bioinformatic files using Arrow, Polars, and/or DuckDB
https://www.wheretrue.dev/docs/exon/biobear/
MIT License
163 stars 9 forks source link

build(deps): update noodles requirement from 0.77 to 0.78 #160

Closed dependabot[bot] closed 4 months ago

dependabot[bot] commented 4 months ago

Updates the requirements on noodles to permit the latest version.

Commits
  • 1a1a322 Bump versions for noodles 0.78.0
  • bec285f fastq/fai/record: Replace Field with a string
  • 5e6d860 fastq/fai/record: Use a record name instead of reference sequence name in exa...
  • dcf3988 sam/record/quality_scores: Add examples
  • 7d6e81f fastq/record: Interpret fields as UTF-8 encoded text when debug formatting
  • 6a71665 fastq/record: Remove fmt::Display
  • d8274f8 fastq/record: Note the quality scores have an unknown encoding
  • 8a20236 fastq/io/writer: Move record writer to a module
  • f24194e fasta/sequence: Add Record trait
  • 5a64751 sam/record/quality_scores: Increase the visibility of QualityScores::new
  • Additional commits viewable in compare view


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dependabot[bot] commented 4 months ago

Looks like noodles is up-to-date now, so this is no longer needed.