Refactor table options to use ConfigExtensions

[tshauck]

Right now using custom parsing from the options hashmap vs actually pulling out the data in the datafusion recommend manner.

• [x] FASTA: https://github.com/wheretrue/exon/pull/544
• [ ] fastq
• [ ] gff
• [x] bed
• [ ] hmm dom tab
• [ ] mzml
• [ ] bam
• [ ] bcf
• [ ] bigwig
• [ ] cram
• [ ] fcs
• [ ] genbank
• [ ] sam
• [ ] vcf