build(deps): bump lightmotif from 0.7.3 to 0.8.0

[dependabot[bot]]

Bumps lightmotif from 0.7.3 to 0.8.0.

Release notes

Sourced from lightmotif's releases.

v0.8.0

Added

lightmotif

• lightmotif::pwm::DiscreteMatrix to store a discretized ScoringMatrix.
• MatrixElement marker trait for Default + Copy types that can be used as a DenseMatrix element.
• lightmotif::scores::Scores wrapper of Vec<T> with shortcut max, threshold and argmax methods.
• AVX2 and NEON implementations of Score<u8, Dna> pipeline operation.

Fixed

lightmotif

• Remove requirement for T: Debug in Clone implementation of DenseMatrix<T>.
• SSE2 and AVX2 implementations of Argmax not returning the last index in case of ties.

lightmotif-tfmpvalue

• Cache internal buffer for Q-values to avoid reallocation between iterations.

Changed

lightmotif

• Cache the Pipeline used in lightmotif::scan::Scanner.
• Make lightmotif::scores::StripedScores generic over the score type.
• Make Maximum and Threshold generic over the score type.
• Use a discrete matrix in Scanner to quickly eliminate blocks without candidate position above given threshold.
• Compile crate without the rand and rand-distr features by default.

lightmotif-py

• Update pyo3 dependency to v0.22.0.

Changelog

Sourced from lightmotif's changelog.

v0.8.0 - 2024-06-28

Added

lightmotif

• lightmotif::pwm::DiscreteMatrix to store a discretized ScoringMatrix.
• MatrixElement marker trait for Default + Copy types that can be used as a DenseMatrix element.
• lightmotif::scores::Scores wrapper of Vec<T> with shortcut max, threshold and argmax methods.
• AVX2 and NEON implementations of Score<u8, Dna> pipeline operation.

Fixed

lightmotif

• Remove requirement for T: Debug in Clone implementation of DenseMatrix<T>.
• SSE2 and AVX2 implementations of Argmax not returning the last index in case of ties.

lightmotif-tfmpvalue

• Cache internal buffer for Q-values to avoid reallocation between iterations.

Changed

lightmotif

• Cache the Pipeline used in lightmotif::scan::Scanner.
• Make lightmotif::scores::StripedScores generic over the score type.
• Make Maximum and Threshold generic over the score type.
• Use a discrete matrix in Scanner to quickly eliminate blocks without candidate position above given threshold.
• Compile crate without the rand and rand-distr features by default.

lightmotif-py

• Update pyo3 dependency to v0.22.0.

Commits

• b11557f Release v0.8.0
• e0f3530 Bump pyo3 dependency to v0.22
• 972259e Compile lightmotif without rand by default
• 81301e8 Cache Q-values buffer in TfmPvalue structure
• 59738a0 Add benchmark for the Maximum::max pipeline operation
• 579d952 Update Avx2::argmax_u8 to use a single comparison
• dae72f3 Add dedicated Maximum::\<f32, _>::max implementation for AVX2
• 0a587d2 Add naive baseline implementation to dna.rs benchmark in lightmotif-bench
• 81ece01 Fix u8 benches speed in threshold.rs benchmark
• 4132b95 Add dedicated Maximum::\<u8, _>::max implementation for AVX2
• Additional commits viewable in compare view

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