search

whitlock / OutFLANK

A procedure to find Fst outliers based on an inferred distribution of neutral Fst
18 stars 9 forks source link

Failed to install in higher version R #35

Closed ChenJuiYANG closed 7 months ago

ChenJuiYANG commented 7 months ago

To install the package OutFLAND, the manual uses the "biocLite". However, the "biocLite" is not supported for newer version R.
An error message returned as follow:

" Error: With R version 3.5 or greater, install Bioconductor packages using BiocManager; see https://bioconductor.org/install "

And after installed BioManager, it said

" package ‘OutFLANK’ is not available for Bioconductor version '3.18' "

(older version BioManager is not working as well, unfortunately)

Is there any other method to install the package other than downgrade R to a lower version? Or, do you have a plan to update OutFLAND?

Thanks, CJ

DrK-Lo commented 7 months ago

I am using R 4.3.1 and the following code works for install:

install.packages("devtools") if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")

BiocManager::install("qvalue", force=TRUE) devtools::install_github("whitlock/OutFLANK", force=TRUE)

ChenJuiYANG commented 7 months ago

Thank you so much! It worked!

CJ