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whole-cell-tutors / whole-cell-reduced

the reduced model developed in salt lake city
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[Metabolism] InitialAssignments for FluxBound update #16

Open matthiaskoenig opened 8 years ago

matthiaskoenig commented 8 years ago

Implementation of AssignmentRules for the update of the flux bounds, based on the following algorithm.

flux_calculation

Currently only simplified change of flux bounds for model testing.

0u812 commented 8 years ago

Just out of curiosity, could I have the reference for the algorithm you posted?

matthiaskoenig commented 8 years ago

It is the Karr supplemental PDF file describing the modules. It is listed in the Metabolism process description.

On Fri, Oct 16, 2015 at 6:16 PM, Kyle Medley notifications@github.com wrote:

Just out of curiosity, could I have the reference for the algorithm you posted?

— Reply to this email directly or view it on GitHub https://github.com/whole-cell-tutors/whole-cell-reduced/issues/16#issuecomment-148758318 .

Matthias König Computational Systems Biochemistry Institute of Biochemistry Charité - Universitätsmedizin Berlin http://www.charite.de/sysbio/people/koenig/ Tel: + 49 30 450528449

Tel: + 49 176 81168480

0u812 commented 8 years ago

Thanks!