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whole-tale / girder_wholetale

Girder plugin providing basic Whole Tale functionality
BSD 3-Clause "New" or "Revised" License
3 stars 5 forks source link

Importing datasets with empty files as binder fails #544

Closed Xarthisius closed 2 years ago

Xarthisius commented 2 years ago

Steps to reproduce

  1. AinWT doi:10.7910/DVN/5JJ6OE (RW)

Actual results

Copying files to workspaceResponseErrorCode: ResponseErrorCode()
<FrameSummary file /girder/plugins/wholetale/server/tasks/import_binder.py, line 196 in run>, 
<FrameSummary file /girder/venv/lib/python3.9/site-packages/fs/copy.py, line 50 in copy_fs>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/fs/copy.py, line 110 in copy_fs_if>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/fs/copy.py, line 450 in copy_dir_if>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/fs/_bulk.py, line 144 in copy>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/fs/copy.py, line 281 in copy_file_internal>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/fs/copy.py, line 272 in _copy_locked>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/fs/base.py, line 1417 in upload>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/webdavfs/webdavfs.py, line 85 in close>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/webdavfs/webdavfs.py, line 93 in flush>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/webdav3/client.py, line 989 in read_from>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/webdav3/client.py, line 67 in _wrapper>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/webdav3/client.py, line 541 in upload_to>
<FrameSummary file /girder/venv/lib/python3.9/site-packages/webdav3/client.py, line 230 in execute_request>

Expected results

things to work