search

wholeGenomeSequencingAnalysisPipeline / BacPipe

GNU General Public License v3.0
8 stars 9 forks source link

Prokka: Building database #10

Closed wholeGenomeSequencingAnalysisPipeline closed 5 years ago

wholeGenomeSequencingAnalysisPipeline commented 7 years ago

Prokka: Looking for 'makeblastdb' - found [15:26:15] Appending to PATH: /Users/bacpipe_mac/All/prokka/prokka/bin/../binaries/darwin [15:26:15] Appending to PATH: /Users/bacpipe_mac/All/prokka/prokka/bin/../binaries/darwin/../common [15:26:15] Appending to PATH: /Users/bacpipe_mac/All/prokka/prokka/bin [15:26:15] Cleaning databases in /Users/bacpipe_mac/All/prokka/prokka/bin/../db [15:26:15] Cleaning complete. [15:26:15] Looking for 'makeblastdb' - found /Users/bacpipe_mac/All/prokka/prokka/bin/../binaries/darwin/makeblastdb dyld: Library not loaded: /usr/local/Cellar/blast/2.4.0/libexec/libblastinput.dylib Referenced from: /Users/bacpipe_mac/All/prokka/prokka/bin/../binaries/darwin/makeblastdb Reason: image not found

[15:26:15] Could not determine version of makeblastdb - please install version 2.2 or higher

Solution

Copy the makeblastdb file executable file from BacPipe source code under: ./mlst/blast-2.2.26/bin/makeblastdb to prokka binaries /prokka/prokka/binaries/darwin/

    sudo cp ./mlst/blast-2.2.26/bin/makeblastdb ./../prokka/prokka/binaries/darwin/