I'm running paired-end fastq files through BacPipe and they go through TrimGalore fine, but when passed to SPAdes, an error appears that says "SPAdes assembly not found".
I downloaded the BacPipe image through Docker and everything seems to be working normally. Attached are the log and parameter files created by the SPAdes program. Any ideas on why it is not running correctly?
Hi,
I'm running paired-end fastq files through BacPipe and they go through TrimGalore fine, but when passed to SPAdes, an error appears that says "SPAdes assembly not found".
I downloaded the BacPipe image through Docker and everything seems to be working normally. Attached are the log and parameter files created by the SPAdes program. Any ideas on why it is not running correctly?
spades.log params.txt