Problem occurring on linux

[aslangabriel]

Hi, I have installed the docker edition on my remote server and VNC viewer on my client laptop. My hostname is shpc My command line is as follows: Would you like to help me fix this problem, thanks a lot

[M-Mysara]

Dear,

I am not 100% sure what went wrong, I advise you to simplify the command to check where is the problem: First try: docker run -i -t mahmed/bacpipe python ./Pipeline.py unix

If that works, try to include the directory (something like): docker run -i -t -v /Users/mohamedahmed/Desktop/Bacpipe/:/mnt/mydata mahmed/bacpipe python ./Pipeline.py unix

If that works, try to include the X11 forwarding (something like):

docker run -i -t -e DISPLAY=$IP:0 -v /tmp/.X11-unix:/tmp/.X11-unix -v /Users/mohamedahmed/Desktop/SCK_CEN/Bacpipe/:/mnt/mydata mahmed/bacpipe python ./Pipeline.py unix

Please make sure that $IP is already defined:

IP=127.0.0.1 (you should use your IP from the command ifconfig)

echo $IP

xhost + $IP

Hope this helps.

Sincerely

Mohamed

On Sat, Sep 17, 2022 at 4:52 AM aslangabriel @.***> wrote:

Hi, I have installed the docker edition on my remote server and VNC viewer on my client laptop. My hostname is shpc [image: image] https://user-images.githubusercontent.com/46910288/190837732-364026e2-80f0-47d8-8830-da736f617636.png My command line is as follows: [image: image] https://user-images.githubusercontent.com/46910288/190837777-8248e838-df83-4018-9f2c-842cc895665e.png Would you like to help me fix this problem, thanks a lot

— Reply to this email directly, view it on GitHub https://github.com/wholeGenomeSequencingAnalysisPipeline/BacPipe/issues/19, or unsubscribe https://github.com/notifications/unsubscribe-auth/AD3HVODTETBXZV6NGSMCVB3V6UW5BANCNFSM6AAAAAAQOZ2QFY . You are receiving this because you are subscribed to this thread.Message ID: @.***>

[aslangabriel]

Appreciate it very much. I have fixed it yours sincerely Qi Feng

Mohamed Mysara @.***> 于2022年10月11日周二 16:18写道：

Dear,

I am not 100% sure what went wrong, I advise you to simplify the command to check where is the problem: First try: docker run -i -t mahmed/bacpipe python ./Pipeline.py unix

If that works, try to include the directory (something like): docker run -i -t -v /Users/mohamedahmed/Desktop/Bacpipe/:/mnt/mydata mahmed/bacpipe python ./Pipeline.py unix

If that works, try to include the X11 forwarding (something like):

docker run -i -t -e DISPLAY=$IP:0 -v /tmp/.X11-unix:/tmp/.X11-unix -v /Users/mohamedahmed/Desktop/SCK_CEN/Bacpipe/:/mnt/mydata mahmed/bacpipe python ./Pipeline.py unix

Please make sure that $IP is already defined:

IP=127.0.0.1 (you should use your IP from the command ifconfig)

echo $IP

xhost + $IP

Hope this helps.

Sincerely

Mohamed

On Sat, Sep 17, 2022 at 4:52 AM aslangabriel @.***> wrote:

Hi, I have installed the docker edition on my remote server and VNC viewer on my client laptop. My hostname is shpc [image: image] < https://user-images.githubusercontent.com/46910288/190837732-364026e2-80f0-47d8-8830-da736f617636.png

My command line is as follows: [image: image] < https://user-images.githubusercontent.com/46910288/190837777-8248e838-df83-4018-9f2c-842cc895665e.png

Would you like to help me fix this problem, thanks a lot

— Reply to this email directly, view it on GitHub < https://github.com/wholeGenomeSequencingAnalysisPipeline/BacPipe/issues/19 , or unsubscribe < https://github.com/notifications/unsubscribe-auth/AD3HVODTETBXZV6NGSMCVB3V6UW5BANCNFSM6AAAAAAQOZ2QFY

. You are receiving this because you are subscribed to this thread.Message ID: @.***>

— Reply to this email directly, view it on GitHub https://github.com/wholeGenomeSequencingAnalysisPipeline/BacPipe/issues/19#issuecomment-1274287068, or unsubscribe https://github.com/notifications/unsubscribe-auth/ALF4WUF4NXR2CC2Z6377NCDWCUPF5ANCNFSM6AAAAAAQOZ2QFY . You are receiving this because you authored the thread.Message ID: @.*** .com>

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