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whweve / IntAssoPlot

GNU General Public License v3.0
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Warning in lapply(X = X, FUN = FUN, ...) : NAs introduced by coercion #8

Open sheshen22 opened 2 years ago

sheshen22 commented 2 years ago

image image library("IntAssoPlot") IntRegionalPlot(chr=9,left=96507356,right=96537543,gtf=gtf1,association=aa,hapmap=hapmap,hapmap_ld=hapmap,threshold=5,leadsnp_size=2)

Hello. The above is the result after I use the code. After I replace the gtf file in the example, the result is the same as the example picture, which means there is no problem with the gtf file. Then, I replaced the hapmap file with hapmap_am368 in the example, and the following results appeared: image image

From this, I think there is something wrong with the hapmap file, but I can't tell the difference between the example file and mine. Do you have a solution please?
Looking forward to your reply,。 thank you.

jessica-smith-ddyy commented 2 days ago

I have the same problem, have you solve it now?