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widdowquinn / find_differential_primers

Code for design of diagnostic PCR primers, and metabarcoding markers.
https://widdowquinn.github.io/find_differential_primers/
MIT License
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Add primer location output for use with IGV #28

Closed widdowquinn closed 5 years ago

widdowquinn commented 5 years ago

It would be useful to visualise the locations of primers against their originating genomes, and against other genomes where they amplify, using IGV.

We could achieve this by producing .gff output for each primersearch or equivalent output.

widdowquinn commented 5 years ago

pdp writes .bed files for the output of pdp eprimer3, pdp deduped, pdp blastscreen, pdp primersearch, andpdp classify` as of 9b937c1.