I did git clone https://github.com/widdowquinn/find_differential_primers
Here is the result of git log | head:
commit 54e4fb3d63d2610559d93249a5e389dad1caed90
Merge: 3e3863d cb830b4
Author: Leighton Pritchard <leightonpritchard@mac.com>
Date: Fri Dec 18 14:20:49 2020 +0000
Merge pull request #56 from nick-youngblut/diagnostic_primers
added ArgumentDefaultsHelpFormatter to all parsers; post-hoc changes to keep to project style (PEP8) by LP.
commit cb830b4d83263a414440c727670cf32247959be2
I did conda install --file requirements.txt -y and conda install --file requirements-thirdparty-primer3_237.txt -y with no problems. Then I did python3 setup.py install --prefix ~.
This installed into my ~/bin/
ls ~/bin
delta_filter_wrapper.py f2py f2py3 f2py3.10 pdp pdp.py pdp_mafft_wrapper.py tqdm
All good so far. But when I try to execute ~/bin/pdp I get this:
~/bin/pdp --help
Traceback (most recent call last):
File "/data/djs217/bin/pdp", line 33, in <module>
sys.exit(load_entry_point('diagnostic-primers==0.2.0.dev0', 'console_scripts', 'pdp')())
File "/data/djs217/bin/pdp", line 22, in importlib_load_entry_point
for entry_point in distribution(dist_name).entry_points
File "/usr/lib/python3.10/importlib/metadata/__init__.py", line 969, in distribution
return Distribution.from_name(distribution_name)
File "/usr/lib/python3.10/importlib/metadata/__init__.py", line 548, in from_name
raise PackageNotFoundError(name)
importlib.metadata.PackageNotFoundError: No package metadata was found for diagnostic-primers
Any ideas what's gone wrong? I could not find installation instructions for this version of pdp/find_differential_primers, only for the stable version.
I did git clone
https://github.com/widdowquinn/find_differential_primers
Here is the result of
git log | head
:I did
conda install --file requirements.txt -y
andconda install --file requirements-thirdparty-primer3_237.txt -y
with no problems. Then I didpython3 setup.py install --prefix ~
.This installed into my ~/bin/
All good so far. But when I try to execute
~/bin/pdp
I get this:Any ideas what's gone wrong? I could not find installation instructions for this version of pdp/find_differential_primers, only for the stable version.