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widdowquinn / pyani

Application and Python module for average nucleotide identity analyses of microbes.
http://widdowquinn.github.io/pyani/
MIT License
185 stars 54 forks source link

`pyani` command not found #412

Closed friedsh2 closed 1 year ago

friedsh2 commented 1 year ago

Summary:

Can't seem to install pyani v0.3+ despite following the v0.3+ documentation

Description:

Despite following the installation instructions from the README (https://github.com/widdowquinn/pyani#conda), the pyani command is still not working. average_nucleotide_identity.py and genbank_get_genomes_by_taxon.py works.

Reproducible Steps:

The instructions from the README were followed to a tee.

Current Output:

pyani: command not found

Expected Output:

Would expect the pyani command to work

pyani Version:

0.2.12

Python Version:

3.8

Operating System:

Ubuntu 20.04 LTS on WSL

widdowquinn commented 1 year ago

Hi @friedsh2

Thank you for your interest in pyani. You appear to have installed pyani v0.2, rather than v0.3. If you would like to install v0.3, you should clone the repository and install from there using, e.g. python setup.py install.

L.