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wiggins-lab / SuperSegger

A completely automated MATLAB-based trainable image cell segmentation, fluorescence quantification and analysis suite, particularly well suited for high-throughput time lapse fluorescence microscopy of in vivo bacterial cells.
GNU General Public License v3.0
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Clist doesnt exist #11

Closed teranmickens closed 6 years ago

teranmickens commented 6 years ago

Hello! I segmented my images, went to the ViewerGui to analyze, but i couldn't save the clist. Nor could most of the commands work because it said 'no clist loaded, these commands will not work'. I'm not sure why this said this when I just finished segmented them.

stellastyl commented 6 years ago

Hello! Which folder are you loading? It should be the outermost folder that contains the xy1, etc folders and the the raw_im folder. If you are loading from the wrong directory it won't be able to find the clist. What do you see when you load your images? Just images or also the cell outlines? And do you see a clist file in your xy directories? Best, Stella

On Thu, Apr 26, 2018, 12:39 PM teranmickens notifications@github.com wrote:

Hello! I segmented my images, went to the ViewerGui to analyze, but i couldn't save the clist. Nor could most of the commands work because it said 'no clist loaded, these commands will not work'. I'm not sure why this said this when I just finished segmented them.

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