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wiggins-lab / SuperSegger

A completely automated MATLAB-based trainable image cell segmentation, fluorescence quantification and analysis suite, particularly well suited for high-throughput time lapse fluorescence microscopy of in vivo bacterial cells.
GNU General Public License v3.0
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File doesn't exist #13

Closed vrkrshna closed 6 years ago

vrkrshna commented 6 years ago

Hello guys,

After a few successful runs, supersegger throws an error saying "Error using imread>get_full_filename". "path/to/file/File doesn't exists". I don't know how to fix this.

Venkata Rao Krishnamurthi

stellastyl commented 6 years ago

Hi! Could you post some more information? What were the messages before? Is this during alignment?

vrkrshna commented 6 years ago

Hi. Thanks for getting back to my question. The problem was with the naming convention. Even though Supersegger approved the naming style it threw that error. When I changed the file name to a different style, It worked fine.

pawiggins commented 6 years ago

vrkrshna:

The name parsing is a really difficult issue. You are typically better off writing your own script to re-write the names if you want SS to be a longer term solution for your research.

--PAW