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wiggins-lab / SuperSegger

A completely automated MATLAB-based trainable image cell segmentation, fluorescence quantification and analysis suite, particularly well suited for high-throughput time lapse fluorescence microscopy of in vivo bacterial cells.
GNU General Public License v3.0
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Genealogy-Tree #18

Closed RoxaneMo closed 6 years ago

RoxaneMo commented 6 years ago

Hello,

I need to know all the cells that belong to the same genealogy tree. Is there an easy way to obtain this information from the "clist"? I would give a different number to all the cells at frame 1 and then give the same corresponding number to the daughters and so on. Do you have suggestions or an easier way to do it?

Thank you. Roxane

pawiggins commented 6 years ago

Hey Roxane:

All the code already essentially exists in the "Lineage" function in the viewer. (Top right.) Next time I update the code, I'll add this to the clist.

--PAW

pawiggins commented 6 years ago

Hey Roxane:

I pushed these changes just now. Generation, Generation0 and Progenitor are added to the clist.

Generation0 = generation relative to progenitor (but only frame 1 progenitors are allow ) Generation = generation relative to progenitor progenitor = progenitor cell ID.

--PAW