A completely automated MATLAB-based trainable image cell segmentation, fluorescence quantification and analysis suite, particularly well suited for high-throughput time lapse fluorescence microscopy of in vivo bacterial cells.
GNU General Public License v3.0
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correct linking errors, problems within superSegger versions #25
Hi,
I tryied the new version (from Sept 5, 2018) and it works quite well, mainly with the new possibilities to add by hand new segments.
However as every change I think there are some compatibilities issues for example:
I cannot train anymore a new constant, I can do that by switching back to the version of May 17, 2018
and then switch back to the new one.
the new fonctionality works great, at deleting cells and adding new permanent segments (background). I would suggest adding the complementary action deleting a "gray" cell border/segment. The Cell Mask doesn't work (or maybe I didn't get how to use it). For each click it creates one cell pixel surrounded by gray segments...what could be done with that ?
a time lapse file corrected with Edit segments, can still have linking problems (as region switch between two time frames). However it seems that the Links edit it is not supposed to work with the new version of "Edit segments" as cell deleted with the second will still appear as region in the Links file and crashes everything (because two regions now happen to have the same number)
I can provide error messages, image files and constants trained !
Hi, I tryied the new version (from Sept 5, 2018) and it works quite well, mainly with the new possibilities to add by hand new segments. However as every change I think there are some compatibilities issues for example:
I can provide error messages, image files and constants trained !
best