highlightnode argument does not highlight nodes

[silviafan]

From showcase_image.py:

netplotbrain.plot(template='MNI152NLin2009cAsym',
                  templatestyle='surface',
                  view='L',
                  nodes='./examples/example_nodes.tsv',
                  hemisphere=['R'],
                  nodescale=5,
                  edges='./examples/example_edges.tsv',
                  templatealpha=0.05,
                  title='Highlight results',
                  templatecolor='gray',
                  highlightlevel=0.9,
                  highlightnodes=[6, 8, 25, 29],
                  fig=fig, ax=ax,
                  nodecolorlegend=False,
                  nodesizelegend=False,)

In general, this happens when nodetype is 'circles' or 'spheres'.

[wiheto]

So it currently highlight the edges only when doing it that way. But not the nodes. I’m actually working on that part of the code right now and will add a fix to it.

Thanks for spotting!

21 apr. 2022 kl. 13:00 skrev Silvia Fanton @.***>:

 From showcase_image.py:

netplotbrain.plot(template='MNI152NLin2009cAsym', templatestyle='surface', view='L', nodes='./examples/example_nodes.tsv', hemisphere=['R'], nodescale=5, edges='./examples/example_edges.tsv', templatealpha=0.05, title='Highlight results', templatecolor='gray', highlightlevel=0.9, highlightnodes=[6, 8, 25, 29], fig=fig, ax=ax, nodecolorlegend=False, nodesizelegend=False,)

In general, this happens when nodetype is 'circles' or 'spheres'.

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[wiheto]

Sorry did not see you had selfassigned to fix it. Let me know if you want to fix it or not.

The problem seems to have been introduced when adding nodealpha as a consequence when adding the scatter plot and matplotlib as it prioritizes the alpha argument over the alpha specification in the color argument. So nodealpha needs to be set to None if the nodecolor is Nx4 in shape after calling highlightnodes.

But since I am working on highlightedges at the moment, do you want me to fix it?

[silviafan]

As you are on it already, you can fix that. I will self-assign something else, no problem!

[wiheto]

Okidokey. Seems like I have fixed it. Testing some other features and will be added when I next update github.