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wiheto / netplotbrain

A package to create simple 3D network visualizations on a brain.
Apache License 2.0
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There seems to be no top view #71

Closed hasibagen closed 3 months ago

hasibagen commented 3 months ago

There seems to be no top view 'S' Superior 'I' Inferior The results of these two views are the same netplotbrain.plot(template='MNI152NLin2009cAsym', view=['I']) netplotbrain.plot(template='MNI152NLin2009cAsym', view=['S'])

截图 2024-09-03 17-13-46

Did I misunderstand or use the code incorrectly? Looking forward to your reply.

wiheto commented 3 months ago

Hey, The silhouettes look the same but they are different. See something like here:

https://www.netplotbrain.org/gallery/two_rows/

Where you can see the I and S view are different.

hasibagen commented 3 months ago

Thank you so much for your reply. I have reviewed the webpage you mentioned, but I still couldn't quite discern the difference between the top and bottom views.

Would it be possible to present a clearer distinction, similar to what we see in anatomical images image or BrainNet Viewer ? image image

For the top view, I am hoping to see more of the cortex, while for the bottom view, I would like to focus on areas like the brainstem rather than the cortex.

wiheto commented 3 months ago

I understand. But all these difference choices come at a cost - because both pictures you sent have no transparency to see the networks -> which is the point of this visualization tool.

There are different templates you can choose from and there are different parameters for each one (e.g. template_style, template_alpha, template_voxelsize, surface_resolution, surface_detection (see https://www.netplotbrain.org/api/)). There should be enough to find something that you are happy with.

We would love to add more templates that try to quickly render the surface or voxels in different ways. But this is a voluntary project where I do not think there is time for anyone contributing to put our work into this at the moment.