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wiheto / teneto

Temporal Network Tools
GNU General Public License v3.0
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Error during derive TVC possible related to confounds report #54

Closed granitz closed 4 years ago

granitz commented 4 years ago

Hey, I got the following error: I had selected confounds_report=True. The tvc files where generated.

.../lib/python3.6/site-packages/teneto/classes/bids.py in derive_temporalnetwork(self, params, update_pipeline, tag, njobs, confound_corr_report) 246 dfc_df_z = (dfc_df - dfc_df.mean()) 247 df_z = (df - df.mean()) --> 248 R_df = dfc_df_z.T.dot(df_z).div(len(dfc_df)).div( 249 df_z.std(ddof=0)).div(dfc_df_z.std(ddof=0), axis=0) 250 description = R_df.describe().transpose().to_html()

.../lib/python3.6/site-packages/pandas/core/frame.py in dot(self, other) 1076 common = self.columns.union(other.index) 1077 if len(common) > len(self.columns) or len(common) > len(other.index): -> 1078 raise ValueError("matrices are not aligned") 1079 1080 left = self.reindex(columns=common, copy=False)

wiheto commented 4 years ago

This is a known error which should be fixed with the upcoming release of 0.5.0 where all the bids stuff is rewritten. For now, confounds_report=False is the only thing to be done here.