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wikipathways / SARS-CoV-2-WikiPathways

Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.
https://wikipathways.github.io/SARS-CoV-2-WikiPathways/
Creative Commons Zero v1.0 Universal
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Difference from (main?) WikiPathways RDF #3

Closed yayamamo closed 4 years ago

yayamamo commented 4 years ago

Hi,

I cloned this repo. and loaded the RDF files into Apache Jena Fuseki at my local PC. I issued a describe SPARQL query of <http://identifiers.org/uniprot/Q9BYF1> to both the local Fuseki and http://sparql.wikipathways.org/sparql . There're some differences. For example, the local one has the following while the WikiPathways SPARQL endpoint doesn't.

<http://rdf.wikipathways.org/Pathway/WP4846_r109431/WP/Interaction/id596b2488>

On the other hand, the following is in the WikiPathways SPARQL EP, but the local one doesn't.

<http://identifiers.org/wikipathways/WP2729_r101328>

So, could you please let me know the difference?

Thanks.

egonw commented 4 years ago

The differences are because http://sparql.wikipathways.org/sparql is less frequently updated. You can see this is in the revision number r101328 for the SPARQL endpoint and r109431 for the GitHub repository. The revision number is derived from the WikiPathways MediaWiki software as increments with each WikiPathways edit (over the full wiki). But the higher the number, the newer the pathway,

yayamamo commented 4 years ago

I got it. Thank you.