Metadata into Network Table

[ariutta]

We can include more metadata for pathways from WikiPathways.

Possibilities that can be extracted from GPML:

• [x] split current name column into two columns: title and organism (keep name)
• [x] description (from GPML <Comment Source="WikiPathways-description">...</Comment>)

Possibilities from WikiPathways (not currently in GPML):

• [ ] Pathway authors
• [ ] License (CC0)
• [ ] Rights holder(s) (WikiPathways? Authors?)
• [ ] Pathway revision/version, e.g., 90080 for this pathway
• [ ] Quality Tags
• [ ] Ontology Terms

@AlexanderPico, what do you think should be included?

When exporting to NDEx, we're asked for author, organism, disease, tissue, rights holder, version, reference, description and name.

[AdamStuart]

fix is here: https://github.com/wikipathways/cytoscape-wikipathways-app/tree/develop

[AlexanderPico]

I just tried importing WP254 using this jar and didn't see any new columns in the Network Table: https://github.com/wikipathways/cytoscape-wikipathways-app/blob/develop/WikiPathways-3.3.7.jar

[AdamStuart]

latest version is 3.3.73

fix is here: https://github.com/wikipathways/cytoscape-wikipathways-app/tree/develop