Map Metabolite annotations to Wikidata

wikipathways / cytoscape-wikipathways-app

WikiPathways app for Cytoscape to open and access pathways from WikiPathways

Apache License 2.0

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Closed ariutta closed 5 years ago

ariutta commented 5 years ago

The app currently maps GeneProduct annotations to Ensembl. Can we similarly map Metabolite annotations to Wikidata?

AdamStuart commented 5 years ago

Is WikiData in BridgeDB, or is it a different database?

mkutmon commented 5 years ago

It's in the metabolite bridgedb database. So it should work the same way.

AdamStuart commented 5 years ago

MappingSource added entries for HMDB, ChEBI, Chemspider, KEGG Compound & PubChem-Compound