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wikipathways / pathway-figure-ocr

Extracting gene sets from published pathway figures
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Intersection of CMap and PFOCR extracted chemicals #25

Closed AlexanderPico closed 3 years ago

AlexanderPico commented 3 years ago

In our shared NIA folder, this file has >6000 drugs annotated for repurposing: CMap_Repurposing_Hub.xlsx

Can you add a column to this table (or create a separate mapping table) based on the intersection of names?

There are no mappings from MeSH to BRD ID, unfortunately, so let's just see what we can get from a simple name match for now. I acknowledge that this will miss a lot of things.

AlexanderPico commented 3 years ago

Here's a second list of drug names to attempt a quick intersection with: https://www.dropbox.com/s/taia99vu2tah6cy/Full%20Library%20Gladstone%20%28with%20cpd%20names%29_20171106.xlsx?dl=0

ariutta commented 3 years ago

First batch: https://www.dropbox.com/s/je6e3q513p5ql3p/CMap_Repurposing_Hub_PFOCR.xlsx?dl=0

ariutta commented 3 years ago

Second batch: https://www.dropbox.com/s/ohu9k2on8yflydc/Full%20Library%20Gladstone%20%28with%20cpd%20names%29_20171106_PFOCR.xlsx?dl=0

AlexanderPico commented 3 years ago

PFOCR overlaps:

ariutta commented 3 years ago

Code used: https://github.com/wikipathways/pathway-figure-ocr/blob/master/notebooks/chemical_intersections.ipynb

ariutta commented 3 years ago

pfocr_id's for CMap: 13,575 pfocr_id's for Anke: 10,045