wikipathways / pathway-figure-ocr

Extracting gene sets from published pathway figures
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Cohort selection figures and tables #38

Open AlexanderPico opened 2 years ago

AlexanderPico commented 2 years ago

Jeff Henrikson 9:35 AM

Alex, regarding cohort selection, here are some resources describing the conventions of Table 1 in epidemiology papers. A paper about Table 1 itself: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6773463/pdf/nihms-1535136.pdf A project about improving culture of Table 1: https://sites.duke.edu/rethinkingclinicaltrials/ehr-phenotyping/table-1-project/ A specialized R package for producing Table 1s: https://cran.r-project.org/web/packages/table1/vignettes/table1-examples.html As I mentioned, in the "Explain It" session this week, our guest SME Dr Andrea Gropman, when asked about what kind of evidence she would like to see on results, requested being able to see the cohorts in the papers being returned.