GMT parsing is missing - Githubissues

wikipathways / rWikiPathways

R package for WikiPathways API

https://r.wikipathways.org/

MIT License

15 stars 6 forks source link

Closed AlexanderPico closed 4 years ago

AlexanderPico commented 4 years ago

We shouldn't rely on clusterProfiler for read.gmt. It's a basic function and our version could include the % parsing that is unique to our files.

Suggestion: Add readPathwayGMT()

GuangchuangYu commented 4 years ago

the source code is just a copy-paste from clusterProfiler::read.gmt(). I think proper acknowledgement is needed.

AlexanderPico commented 4 years ago

Sure, happy to. I'll add an acknowledgement to the functions man description.

GuangchuangYu commented 4 years ago

thanks.