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wikipathways / wikipathways.org

The main web site for the WikiPathways project.
http://wikipathways.org
GNU General Public License v2.0
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"Nanopublications" data has loss. I can get the relevant data. #116

Open xiongsircool opened 2 years ago

xiongsircool commented 2 years ago

The file's path is that "Other file fprmats,Machine-readable formats,Nanopublications" . it get me a link to down. but wen i click.i call back that like the image. the link is http://app.tkuhn.eculture.labs.vu.nl/nanopub-monitor/ image

Chris-Evelo commented 2 years ago

I emailed Tobias Kuhn about this, since the link goes to his side, I asked him to reply here

xiongsircool commented 2 years ago

I emailed Tobias Kuhn about this, since the link goes to his side, I asked him to reply here

Thank you

tkuhn commented 2 years ago

I am not sure I understand the problem. The nanopub monitor instance of the link above is no longer running, but others are up, for example this one: https://monitor.petapico.org/

xiongsircool commented 2 years ago

I am not sure I understand the problem. The nanopub monitor instance of the link above is no longer running, but others are up, for example this one: https://monitor.petapico.org/

thank you I want to down the interaction data.when i click the blue word. i get 404. https://www.wikipathways.org/index.php/Help:FileFormats image

tkuhn commented 2 years ago

The description of this link is a bit confusing. This is just a monitor of the nanopub network. The latest index nanopub can be found here: http://purl.org/np/RAUkkB0ap6XzM4DdGtDnXE36Q-pnd3w0einrK6MAgDwXM

From this you can browse through all the nanopubs of that release (form 2020; there doesn't seem to be a newer one).

You can also download all nanopubs, but that requires currently the np command line tool to combine all nanopubs in a single file.

I can show you how to do that or do it for you, if that's what you are looking for? (We should offer a platform that allows for downloading these datasets in bulk, but as many things in the nanopub ecosystem, this is still somewhat experimental).