Improve genotype I/O - Githubissues

wilcas / vaecit

Variational autoencoders to use latent factors in causal inference

Apache License 2.0

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Closed wilcas closed 5 years ago

wilcas commented 5 years ago

First ideas:

Load all identifiers and rsids into memory up front and create a table, use table to get correct files for each snp
store genotypes as HDF5 and rework better functions that leverage the slicing capabilities of the data