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wildberry93 / oxyphen

Program for oxygen phenotype assignment based on proteome sequences
GNU General Public License v3.0
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Python3 not supported #3

Open sgarciah12 opened 4 months ago

sgarciah12 commented 4 months ago

Dear @wildberry93,

I would love to use your Oxyphen utility but it is not updated to use Python3. Is there a chance that you have a working version of Oxyphen running in Python3?

Thank you for your time and help,

Best regards

Samuel

wildberry93 commented 4 months ago

Dear Samuel,

Thank you for your interest in Oxyphen. I’m not actively maintaining the code anymore. However, it should work with Python 3.0 without any major issues. I believe that if you adjust print() clauses in the code, you should be able to run it.

All the best, Jagoda

Jagoda Jablonska, PhD

On 27 Feb 2024, at 20:05, Samuel G. Huete @.***> wrote:

Dear @wildberry93 https://github.com/wildberry93,

I would love to use your Oxyphen utility but it is not updated to use Python3. Is there a chance that you have a working version of Oxyphen running in Python3?

Thank you for your time and help,

Best regards

Samuel

— Reply to this email directly, view it on GitHub https://github.com/wildberry93/oxyphen/issues/3, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB45KNFTQHAP7WIXB3E4MBLYVYN6BAVCNFSM6AAAAABD4SUYMWVHI2DSMVQWIX3LMV43ASLTON2WKOZSGE2TOMRZHE2DSOI. You are receiving this because you were mentioned.

sgarciah12 commented 4 months ago

Dear @wildberry93,

Thanks for the quick answer. I changed the print() clauses, which worked as expected in Python 3, identifying homologs for the oxygen-utilizing enzymes. Nonetheless, I see in the code that the lines running the prediction with the classifier are commented and thus do not work. Was it on purpose? Should it run the prediction correctly if uncommented (removing #)?

Thanks again for your time,

Best regards

Samuel