chore/use_anndata - Githubissues

wilhelm-lab / oktoberfest

Rescoring and spectral library generation pipeline for proteomics.

MIT License

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chore/use_anndata #203

Closed arne-vdb closed 1 month ago

arne-vdb commented 4 months ago

[x] This comment contains a description of changes (with reason)
[ ] Referenced issue is linked
[x] If you've fixed a bug or added code that should be tested, add tests!
[x] Documentation in docs is updated

Description of changes

Changed the Spectra object data storage attribute spectra_data from a pd.DataFrame to an anndata AnnData Object.

Technical details

anndata dependency was added and python support changed from >=3.8 to >=3.9 to accomondate the newest anndata version.