While working on an extension to the contains_group rule, I noticed a small bug - basically, if any group of features is found to contain all of the names in feature_names but has gaps or orientations that don't meet the user requirements, the rule will automatically fail. However, the operon may very well an contain a group of Features upstream that meet all requirements. Therefore, all Feature windows should be exhausted before returning False.
While working on an extension to the
contains_grouprule, I noticed a small bug - basically, if any group of features is found to contain all of the names infeature_namesbut has gaps or orientations that don't meet the user requirements, the rule will automatically fail. However, the operon may very well an contain a group of Features upstream that meet all requirements. Therefore, all Feature windows should be exhausted before returning False.This should fix the issue.